SciFigure AI logoSciFigure AI

Workflow Diagram AI

AI Workflow Diagram Generator

Create clean workflow diagrams for research methods, lab protocols, study designs, data pipelines, and review workflows. Describe the process, branches, inputs, outputs, and review steps, then generate a polished figure for papers, posters, and slides.

Research workflowsFlowcharts and pipelinesMethods and protocol ready

AI Workflow Diagram Generator

Describe a research protocol, methods section, pipeline, or process flow you need.

Costs 5 credits328 / 2000 characters

Generate a publication-ready PNG from your workflow description.

Preview

Workflow Diagram Example Previews

Target aspect ratio: 16:9

Clinical trial workflow diagram with screening, enrollment, randomization, treatment arms, follow-up, and analysis
RNA-seq workflow diagram from sample collection through sequencing, alignment, differential expression, and pathway interpretation
Drug screening workflow diagram with compound library, cell seeding, assay readout, hit selection, and dose validation

Sample previews. Describe your workflow to generate your own diagram.

Workflow Diagram Examples

Use these examples as visual directions for research protocols, data pipelines, lab methods, study designs, and manuscript-ready workflow diagrams.

Clinical trial workflow diagram with screening, enrollment, randomization, treatment arms, follow-up, and analysis

Prompt

Create a clinical trial workflow diagram based on a study protocol. Show patient screening, eligibility check, enrollment, randomization, treatment arms, follow-up visits, outcome assessment, and final analysis. Use clear decision branches, grouped stages, concise labels, and a publication-ready white-background style.

Clinical Trial Workflow

RNA-seq workflow diagram from sample collection through sequencing, alignment, differential expression, and pathway interpretation

Prompt

Create an RNA-seq analysis pipeline workflow based on a methods section. Show biological sample collection, RNA extraction, quality control, library preparation, sequencing, read alignment, count matrix generation, differential expression, and pathway interpretation. Use grouped wet-lab and computational stages with clean arrows and readable labels.

RNA-seq Analysis Pipeline

Drug screening workflow diagram with compound library, cell seeding, assay readout, hit selection, and dose validation

Prompt

Create a drug screening workflow diagram based on an assay protocol. Show compound library preparation, automated cell seeding, treatment plate setup, incubation, assay readout, hit selection, dose-response validation, and lead candidate review. Use one validation branch, concise labels, and a clean pharmacology figure layout.

Drug Screening Workflow

CRISPR protocol workflow diagram with guide RNA design, cloning, transfection, selection, genotyping, and phenotype assay

Prompt

Create a CRISPR protocol workflow diagram based on an editing experiment. Show guide RNA design, donor template or vector assembly, cell transfection, antibiotic selection, clonal expansion, genotyping PCR, sequencing validation, and phenotype assay. Use a two-row methods layout with clear arrows and publication-ready labels.

CRISPR Protocol Workflow

Sample preparation workflow diagram with specimen collection, barcode labeling, aliquoting, extraction, storage, and instrument run

Prompt

Create a sample preparation workflow diagram based on a lab SOP. Show specimen collection, barcode labeling, aliquoting, homogenization, extraction, purification, cold storage, instrument run, and data handoff. Use a clean S-shaped process flow with short labels and white-background scientific styling.

Sample Preparation Workflow

Machine learning training workflow diagram with data cleaning, feature extraction, train validation test split, tuning, evaluation, and monitoring

Prompt

Create an ML training pipeline workflow based on a computational methods section. Show raw research data, data cleaning, feature extraction, train-validation-test split, model training, hyperparameter tuning loop, test evaluation, deployment, and monitoring. Use a clear feedback loop and readable research workflow labels.

ML Training Pipeline

How to make a workflow diagram

1

Describe the process

Paste a methods section, protocol, pipeline notes, inputs, outputs, decision points, or review workflow.

2

Structure the flow

Arrange stages, branches, dependencies, feedback loops, labels, and grouped sections so the process can be read at a glance.

3

Generate and refine

Create the workflow diagram, check ordering and labels, then adjust the prompt until the figure matches your study.

What can this workflow diagram generator do?

A workflow diagram generator turns written methods, protocols, study plans, and process notes into a clean visual flow. It can show sequential steps, parallel branches, decision points, sample movement, data analysis, outputs, and review loops in a format that is easier to scan than a dense methods paragraph.

Why researchers need workflow diagrams

  • Show the order of experimental steps, analysis stages, and decision branches.
  • Make lab protocols, research methods, and study designs easier to review.
  • Communicate inputs, outputs, sample counts, quality checks, and deliverables in one figure.
  • Turn a dense methods paragraph into a workflow diagram readers can scan quickly.

How to create an effective workflow diagram

Start with the process goal, then list each step in order. Add inputs, outputs, branch conditions, feedback loops, owners, assays, instruments, datasets, or checkpoints only when they help the reader understand the workflow. Keep labels short and use grouped stages when the workflow spans wet-lab, computational, clinical, or review phases.

Common elements in workflow diagrams

  • Process boxes for methods steps, tasks, or stages.
  • Directional arrows that show sequence and flow.
  • Decision diamonds for eligibility, quality control, approval, or pass-fail logic.
  • Parallel branches for treatment arms, analysis paths, or alternative methods.
  • Output labels for datasets, figures, reports, candidates, or final conclusions.

Workflow Diagram Generator FAQ

You can create lab protocol workflows, research flowcharts, clinical study workflows, bioinformatics pipelines, sample processing maps, ML pipelines, and other scientific process diagrams.

Create your workflow diagram now

Turn methods, pipelines, lab protocols, study plans, and review workflows into clean visual diagrams with SciFigure.